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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G031800.1.p | ||||||||
Common Name | LOC101783320, SETIT_026706mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 295aa MW: 31417 Da PI: 8.9059 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 96 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d s+ g ++ k+++lg++ t+e+Aaka++ a++k++g Seita.8G031800.1.p 96 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVTEEQAAKAHDLAALKYWG 155 789******************666696675336*************************98 PP | |||||||
2 | AP2 | 53 | 8.8e-17 | 200 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e + k ++lg+f+t+eeAa+a++ a+ +l+g Seita.8G031800.1.p 200 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 253 67*****999.9******99953323..36*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.73E-13 | 96 | 167 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-13 | 96 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-11 | 96 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-19 | 97 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-12 | 97 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.884 | 97 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-18 | 200 | 263 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.01E-22 | 200 | 263 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 200 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-28 | 201 | 267 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 201 | 261 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-20 | 201 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 202 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 227 | 243 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MATVRPQSPA GPAPSPPQEG RHGDAPNPPA ASGEPPAAAG PGGGGGEIAA LDKQLAVGGG 60 GGGEERKMGG GASAGAGGGR KLVAEAMRKY AAPRSSRFHG VTRLKWSGKY EAHLWDNTSQ 120 VEGRKRKGKH VYLGSYVTEE QAAKAHDLAA LKYWGTGPNT KLNFSISDYE KEIEIMKTMS 180 QDEFVAYIRR QSSCFSRGTS SYRGVTRRKD GKWQARIGRI GESRDTKDIY LGTFDTEEEA 240 AEAYDIAAIE LRGVHAVTNF DISNYCEDGL RKLEGPSEVA KLEGPSEVMK LAGQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685118 | 0.0 | AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978683.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 8e-71 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q5YGP7 | 4e-70 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | K3ZJF3 | 0.0 | K3ZJF3_SETIT; Uncharacterized protein | ||||
STRING | Si026706m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-61 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G031800.1.p |
Entrez Gene | 101783320 |