PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G031800.1.p
Common NameLOC101783320, SETIT_026706mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 295aa    MW: 31417 Da    PI: 8.9059
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1496155155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++ k++g+++A+++d  s+  g  ++ k+++lg++ t+e+Aaka++ a++k++g
  Seita.8G031800.1.p  96 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVTEEQAAKAHDLAALKYWG 155
                         789******************666696675336*************************98 PP
2AP2538.8e-17200253155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++k +g+W A+I    e +    k ++lg+f+t+eeAa+a++ a+ +l+g
  Seita.8G031800.1.p 200 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 253
                         67*****999.9******99953323..36*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.73E-1396167No hitNo description
SuperFamilySSF541711.63E-1396165IPR016177DNA-binding domain
PfamPF008471.9E-1196155IPR001471AP2/ERF domain
SMARTSM003806.3E-1997171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1297165IPR001471AP2/ERF domain
PROSITE profilePS5103216.88497165IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-18200263IPR016177DNA-binding domain
CDDcd000183.01E-22200263No hitNo description
PfamPF008471.2E-11200253IPR001471AP2/ERF domain
SMARTSM003801.5E-28201267IPR001471AP2/ERF domain
PROSITE profilePS5103219.375201261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-20201261IPR001471AP2/ERF domain
PRINTSPR003679.6E-6202213IPR001471AP2/ERF domain
PRINTSPR003679.6E-6227243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MATVRPQSPA GPAPSPPQEG RHGDAPNPPA ASGEPPAAAG PGGGGGEIAA LDKQLAVGGG  60
GGGEERKMGG GASAGAGGGR KLVAEAMRKY AAPRSSRFHG VTRLKWSGKY EAHLWDNTSQ  120
VEGRKRKGKH VYLGSYVTEE QAAKAHDLAA LKYWGTGPNT KLNFSISDYE KEIEIMKTMS  180
QDEFVAYIRR QSSCFSRGTS SYRGVTRRKD GKWQARIGRI GESRDTKDIY LGTFDTEEEA  240
AEAYDIAAIE LRGVHAVTNF DISNYCEDGL RKLEGPSEVA KLEGPSEVMK LAGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978683.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE18e-71AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP74e-70PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK3ZJF30.0K3ZJF3_SETIT; Uncharacterized protein
STRINGSi026706m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-61AP2 family protein